Deniz, Ashok: search on Z-Library

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1

Multicolor single-molecule FRET to explore protein folding and binding

Gambin, Yann, Deniz, Ashok A.

Journal:

Molecular BioSystems

Year:

2010

Language:

english

File:

PDF, 1.69 MB

english, 2010

2

Visualizing a one-way protein encounter complex by ultrafast single-molecule mixing

Gambin, Yann, VanDelinder, Virginia, Ferreon, Allan Chris M, Lemke, Edward A, Groisman, Alex, Deniz, Ashok A

Journal:

Year:

2011

Language:

english

File:

PDF, 739 KB

english, 2011

3

Physical Chemistry of Cellular Liquid Phase Separation

Bentley, Emily P., Frey, Benjamin B., Deniz, Ashok

Journal:

Chemistry - A European Journal

Year:

2018

Language:

english

File:

PDF, 1.27 MB

english, 2018

4

Two-Dimensional Crowding Uncovers a Hidden Conformation of α-Synuclein

Banerjee, Priya R., Moosa, Mahdi Muhammad, Deniz, Ashok A.

Journal:

Angewandte Chemie International Edition

Year:

2016

Language:

english

File:

PDF, 1.24 MB

english, 2016

5

Reentrant phase transition drives dynamic substructure formation in ribonucleoprotein droplets

Banerjee, Priya R., Milin, Anthony N., Moosa, Mahdi Muhammad, Onuchic, Paulo L., Deniz, Ashok

Journal:

Angewandte Chemie International Edition

Year:

2017

Language:

english

File:

PDF, 1.55 MB

english, 2017

6

Enzymes can adapt to cold by wiggling regions far from their active site

Deniz, Ashok A.

Journal:

Year:

2018

Language:

english

File:

PDF, 601 KB

english, 2018

7

Networking and Dynamic Switches in Biological Condensates

Deniz, Ashok A.

Journal:

Year:

2020

File:

PDF, 388 KB

2020

8

Reentrant Phase Transitions and Non-Equilibrium Dynamics in Membraneless Organelles

Milin, Anthony N., Deniz, Ashok A.

Journal:

Year:

2018

Language:

english

File:

PDF, 970 KB

english, 2018

9

The sub-picosecond dynamics of diphenylmethylchloride ion pairs and radical pairs

Matthew Lipson, Ashok A Deniz, Kevin S Peters

Journal:

Chemical Physics Letters

Year:

1998

Language:

english

File:

PDF, 103 KB

english, 1998

10

Microfluidic Device for Single-Molecule Experiments with Enhanced Photostability

Lemke, Edward A., Gambin, Yann, Vandelinder, Virginia, Brustad, Eric M., Liu, Hsiao-Wei, Schultz, Peter G., Groisman, Alex, Deniz, Ashok A.

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 1.08 MB

english, 2009

11

Site-Specific Three-Color Labeling of α-Synuclein via Conjugation to Uniquely Reactive Cysteines during Assembly by Native Chemical Ligation

Lee, Taehyung C., Moran, Crystal R., Cistrone, Philip A., Dawson, Philip E., Deniz, Ashok A.

Journal:

Cell Chemical Biology

Year:

2018

Language:

english

File:

PDF, 1.36 MB

english, 2018

12

Keeping it Disordered: A New Mechanism of Protein Quality Control?

Banerjee, Priya R., Deniz, Ashok

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 37 KB

english, 2015

13

Ratiometric SingleâMolecule FRET Measurements to Probe Conformational Subpopulations of Intrinsically Disordered Proteins

Nasir, Irem, Bentley, Emily P., Deniz, Ashok A.

Journal:

Current Protocols in Chemical Biology

Year:

2020

File:

PDF, 838 KB

2020

14

Probing protein disorder and complexity at single-molecule resolution

Lee, Taehyung, Moran-Gutierrez, Crystal R., Deniz, Ashok A.

Journal:

Seminars in Cell & Developmental Biology

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

15

Conformational Polymorphism in Conditionally Disordered Nucleophosmin: From Single-Molecules to Liquid Droplets

Banerjee, Priya R., Mitrea, Diana M., Kriwacki, Richard W., Deniz, Ashok

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 43 KB

english, 2016

16

Mobility of Xe Atoms within the Oxygen Diffusion Channel of Cytochrome ba 3 Oxidase

Luna, V. Mitch, Fee, James A., Deniz, Ashok A., Stout, C. David

Journal:

Year:

2012

Language:

english

File:

PDF, 3.26 MB

english, 2012

17

Single-Molecule and Ensemble Structural Study of the AAA+ Atpase P97

Lee, Taehyung, Kang, MinJin, Chapman, Eli, Deniz, Ashok A.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 43 KB

english, 2014

18

Frontispiz: Reentrant Phase Transition Drives Dynamic Substructure Formation in Ribonucleoprotein Droplets

Banerjee, Priya R., Milin, Anthony N., Moosa, Mahdi Muhammad, Onuchic, Paulo L., Deniz, Ashok A.

Journal:

Angewandte Chemie

Year:

2017

File:

PDF, 2.00 MB

2017

19

Onâsurface Synthesis of a Chiral Graphene Nanoribbon with Mixed Edge Structure

Keerthi, Ashok, SÃ¡nchez-SÃ¡nchez, Carlos, Deniz, Okan, Ruffieux, Pascal, Schollmeyer, Dieter, Feng, Xinliang, Narita, Akimitsu, Fasel, Roman, MÃ¼llen, Klaus

Journal:

Chemistry (Weinheim an der Bergstrasse, Germany)

Year:

2020

File:

PDF, 1.53 MB

2020

20

Alteration of the α-Synuclein Folding Landscape by a Mutation Related to Parkinson’s Disease

Allan Chris M. Ferreon, Crystal R. Moran, Josephine C. Ferreon, Ashok A. Deniz

Journal:

Angewandte Chemie International Edition

Year:

2010

Language:

english

File:

PDF, 475 KB

english, 2010

21

High-Resolution smFRET in a Microfluidic Gas Exchange Platform

Gambin, Yann, Lemke, Edward A., Vandelinder, Virginia, Groisman, Alexander, Deniz, Ashok A.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 56 KB

english, 2010

22

Monitoring the Conformational Fluctuations of DNA Hairpins Using Single-Pair Fluorescence Resonance Energy Transfer

Grunwell, Jocelyn R., Glass, Jennifer L., Lacoste, Thilo D., Deniz, Ashok A., Chemla, Daniel S., Schultz, Peter G.

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 231 KB

english, 2001

23

High-Resolution Temperature−Concentration Diagram of α-Synuclein Conformation Obtained from a Single Förster Resonance Energy Transfer Image in a Microfluidic Device

Vandelinder, Virginia, Ferreon, Allan Chris M., Gambin, Yann, Deniz, Ashok A., Groisman, Alex

Journal:

Analytical Chemistry

Year:

2009

Language:

english

File:

PDF, 2.08 MB

english, 2009

24

α-Synuclein Multistate Folding Thermodynamics: Implications for Protein Misfolding and Aggregation †

Ferreon, Allan Chris M., Deniz, Ashok A.

Journal:

Year:

2007

Language:

english

File:

PDF, 270 KB

english, 2007

25

A General and Efficient Method for the Site-Specific Dual-Labeling of Proteins for Single Molecule Fluorescence Resonance Energy Transfer

Brustad, Eric M., Lemke, Edward A., Schultz, Peter G., Deniz, Ashok A.

Journal:

Journal of the American Chemical Society

Year:

2008

Language:

english

File:

PDF, 399 KB

english, 2008

26

R ATIOMETRIC S INGLE -M OLECULE S TUDIES OF F REELY D IFFUSING B IOMOLECULES

Deniz, Ashok A, Laurence, Ted A, Dahan, Maxime, Chemla, Daniel S, Schultz, Peter G, Weiss, Shimon

Journal:

Annual Review of Physical Chemistry

Year:

2001

Language:

english

File:

PDF, 537 KB

english, 2001

27

Single-Molecule Spectroscopy Reveals the Role of Two-Dimensional Crowding in Disordered Protein Folding

Banerjee, Priya R., Moosa, Mahdi, Deniz, Ashok

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 45 KB

english, 2017

28

Reentrant phase transition drives dynamic substructure formation in ribonucleoprotein droplets

Banerjee, Priya R., Milin, Anthony N., Moosa, Mahdi Muhammad, Onuchic, Paulo L., Deniz, Ashok

Journal:

Angewandte Chemie

Year:

2017

Language:

english

File:

PDF, 1.55 MB

english, 2017

29

Nucleophosmin integrates within the nucleolus via multi-modal interactions with proteins displaying R-rich linear motifs and rRNA

Mitrea, Diana M, Cika, Jaclyn A, Guy, Clifford S, Ban, David, Banerjee, Priya R, Stanley, Christopher B, Nourse, Amanda, Deniz, Ashok A, Kriwacki, Richard W

Journal:

Year:

2016

Language:

english

File:

PDF, 3.18 MB

english, 2016

30

Temporal fluctuations of fluorescence resonance energy transfer between two dyes conjugated to a single protein

Taekjip Ha, Alice Y. Ting, Joy Liang, Daniel S. Chemla, Peter G. Schultz, Shimon Weiss, Ashok A. Deniz

Journal:

Chemical Physics

Year:

1999

Language:

english

File:

PDF, 308 KB

english, 1999

31

Single-Molecule Fluorescence Spectroscopy of Enzyme Conformational Dynamics and Cleavage Mechanism

Taekjip Ha, Alice Y. Ting, Joy Liang, W. Brett Caldwell, Ashok A. Deniz, Daniel S. Chemla, Peter G. Schultz and Shimon Weiss

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.92 MB

english, 1999

32

Forced Folding of a Disordered Protein Accesses an Alternative Folding Landscape

Moosa, Mahdi Muhammad, Ferreon, Allan Chris M., Deniz, Ashok A.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.21 MB

english, 2015

33

Asymmetric Modulation of Protein Order-Disorder Transitions by Phosphorylation and Partner Binding

Banerjee, Priya R., Mitrea, Diana M., Kriwacki, Richard W., Deniz, Ashok A.

Journal:

Angewandte Chemie

Year:

2016

Language:

english

File:

PDF, 2.14 MB

english, 2016

34

Divalent cations can control a switch-like behavior in heterotypic and homotypic RNA coacervates

Onuchic, Paulo L., Milin, Anthony N., Alshareedah, Ibraheem, Deniz, Ashok A., Banerjee, Priya R.

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 2.16 MB

english, 2019

35

New effects in polynucleotide release from cationic lipid carriers revealed by confocal imaging, fluorescence cross-correlation spectroscopy and single particle tracking

Svitlana Berezhna, Stephan Schaefer, Rainer Heintzmann, Michael Jahnz, Guido Boese, Ashok Deniz, Petra Schwille

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2005

Language:

english

File:

PDF, 590 KB

english, 2005

36

Examining the Polyproline Nanoscopic Ruler in the Context of Quantum Dots

Gemmill, Kelly Boeneman, Dı́az, Sebastián A., Blanco-Canosa, Juan B., Deschamps, Jeffrey R., Pons, Thomas, Liu, Hsiao-Wei, Deniz, Ashok, Melinger, Joseph, Oh, Eunkeu, Susumu, Kimihiro, Stewart, Michae

Journal:

Chemistry of Materials

Year:

2015

Language:

english

File:

PDF, 4.64 MB

english, 2015

37

The Effects of Antibodies on Stilbene Excited-State Energetics

Feng Tian, Erik W. Debler, David P. Millar, Ashok A. Deniz, Ian A. Wilson, Peter G. Schultz

Journal:

Angewandte Chemie International Edition

Year:

2006

Language:

english

File:

PDF, 376 KB

english, 2006

38

Denaturant-specific effects on the structural energetics of a protein-denatured ensemble

Moosa, Mahdi Muhammad, Goodman, Asha Z., Ferreon, Josephine C., Lee, Chul Won, Ferreon, Allan Chris M., Deniz, Ashok A.

Journal:

European Biophysics Journal

Year:

2017

Language:

english

File:

PDF, 1.07 MB

english, 2017

39

The Rop-Dimer: A Folded Protein Living Between Two Alternate Structures

Schug, Alexander, Gambin, Yann, Deniz, Ashok, Onuchic, Jose

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 85 KB

english, 2009

40

Single-molecule fluorescence studies of intrinsically disordered proteins and liquid phase separation

Nasir, Irem, Onuchic, Paulo L., Labra, Sergio R., Deniz, Ashok A.

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2019

Language:

english

File:

PDF, 1.07 MB

english, 2019

41

ChemInform Abstract: Experimental Determination of the Antiaromaticity of Cyclobutadiene

Ashok A. Deniz, Kevin S. Peters, Gary J. Snyder

Journal:

Year:

2000

File:

PDF, 25 KB

2000

42

Picosecond Kinetic Study of the Dynamics for Photoinduced Homolysis and Heterolysis in Diphenylmethyl Chloride

Lipson, Matthew, Deniz, Ashok A., Peters, Kevin S.

Journal:

Journal of Physical Chemistry

Year:

1996

Language:

english

File:

PDF, 362 KB

english, 1996

43

Freely Diffusing Single Hairpin Ribozymes Provide Insights into the Role of Secondary Structure and Partially Folded States in RNA Folding

Pljevaljčič, Goran, Millar, David P., Deniz, Ashok A.

Journal:

Biophysical Journal

Year:

2004

Language:

english

File:

PDF, 258 KB

english, 2004

44

Modulation of allostery by protein intrinsic disorder

Ferreon, Allan Chris M., Ferreon, Josephine C., Wright, Peter E., Deniz, Ashok A.

Journal:

Year:

2013

Language:

english

File:

PDF, 834 KB

english, 2013

45

Single-Pair Fluorescence Resonance Energy Transfer on Freely Diffusing Molecules: Observation of Förster Distance Dependence and Subpopulations

Ashok A. Deniz, Maxime Dahan, Jocelyn R. Grunwell, Taekjip Ha, Ann E. Faulhaber, Daniel S. Chemla, Shimon Weiss and Peter G. Schultz

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.99 MB

english, 1999

46

Ultrafast cooling reveals microsecond-scale biomolecular dynamics

Polinkovsky, Mark E., Gambin, Yann, Banerjee, Priya R., Erickstad, Michael J., Groisman, Alex, Deniz, Ashok A.

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 1.18 MB

english, 2014

47

Probing nanoscale structure and dynamics of amyloidogenic proteins using single-molecule fluorescence

Journal:

Nanomedicine: Nanotechnology, Biology and Medicine

Year:

2007

Language:

english

File:

PDF, 55 KB

english, 2007

48

Double mutant MBP refolds at same rate in free solution as inside the GroEL/GroES chaperonin chamber when aggregation in free solution is prevented

Navneet K. Tyagi, Wayne A. Fenton, Ashok A. Deniz, Arthur L. Horwich

Journal:

Year:

2011

Language:

english

File:

PDF, 409 KB

english, 2011

49

Folding of Disordered Proteins: Single Molecules to Mesoscales

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 43 KB

english, 2017

50

Fluorescence from Diffusing Single Molecules Illuminates Biomolecular Structure and Dynamics

Samrat Mukhopadhyay, Ashok A. Deniz

Journal:

Journal of Fluorescence

Year:

2007

Language:

english

File:

PDF, 371 KB

english, 2007

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